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Yeah many of the features from RSE arent in MD mostly because they influence the max stats of the pokemon and in MD you can get all stats up to 999 so there isnt really a need for the values. ;123;
I'm actually GLAD there are no shinies! Here's why
GYA!
Shiny rayquaza flew down!
Your partener uses ice beam! 999 damage!
rayquaza dies! No shiny pokemon for you.
Honestly though it would be too hard to get a shiny, not only having to overcome the odds of one appearing BUT you still have to see it AND get it to join your team IF it even can!