I find your fiction...illogical, yet fascinating at best.
first of all, you have a lot of potential, I can see that right now.
but...Legendaries?
no offense, but it seems rather...well, unorthodox and implausible that they're able to control everything.
On top of that, this seems like a summary, not an actual story. However, I can see that you have a very good grasp of science.
The nuclear bomb was a very good example.
However, you failed to take into account two basic laws of physics in the space shuttle part.
1. An object in motion will continue its motion unless acted upon by an outside force
2. for every action, there is an equal and opposite reaction.
Well, if the space shuttle was going at the speed that shuttles do (They enter the atmosphere at around Mach 25), the ocean would stop the shuttle, but not the people inside the shuttle.
thus, the people inside the shuttle would keep going inside the shuttle, until stopped by the space shuttle floor. The floor, however, would have stopped before the people inside, and the people would end up smeared all over the floor of the space shuttle, due to the velocity that they were travelling. In addition, because of the extreme pressures involved in the sudden slowdown, the shuttle would have plunged hundreds of feet below the surface, and broken up almost as soon as it hit the water.
That IS why they used parachutes in the space capsule days...
okay, second of all, you messed up on what I would assume to be a basic, instinctive reaction of the Banette to the Umbreon (this is not taking into account that it would take hundreds of Banett hundreds of Shadow Balls for Latios to be beaten). This instinct is known as strength in numbers. While they were already in the "fight or flight" syndrome, one or two would be surprised, yes, but you stated that there were MANY Banette (which, by the way, I've never heard of before), and while one or two discouraged Banette would have fled, the rest would have come back and swamped the Umbreon (unless it's more powerful than Latios).
also, you should never, NEVER, put an Author's note in the middle of a chapter. It interrupts the flow. Put it at the end, if it contains any spoilers about the chapter.
also, flashbacks should be subtly worked in, not having the "*back to the present*" crudely slapped on like you did.
Things were destroyed and scientists finally calmed Mewtwo down with coercion from an army of dark and ghost pokemon that they kept around just in case.
*snickers*
calmed down?
yeah, right. What kind of person (or Pokemon) would be "calmed down" after being attacked, after being treated like a circus sideshow?
also, wh would someone give Billy the codes, how could Blaziken defeat what surely must be dozens of guards (due to Mewtwo's powerful abilities), and why are you putting Mewtwo out of character?
Mewtwo is ruthless, yet not without heart. If he saw a chance to escape, he'd take it, no questions asked, at least if you're going with the anime version.
m'kay, so it doesn't necessarily fall in with the anime. that takes care of Mewtwo's personality, but not the other two contentiosn I have with his...acquisition.
hm....
question...how long did it take them to reach NASA HQ from the shuttle?
how long did it take to remember?
how long did it take to get rid of the shield (which, coincidentally, would invariably cut off traffic, due to NASA HQ being inside a city)?
Question!
DNA is contained in the Nucleus of a cell. How would it get out of its nucleus? and, if it got out of that, how would it get past the Cell wall/membrane? How would the DNA replicate itself? There would be no possible way unless somehow RNA was also in the DNA sample, and even then, it requires special things called...okay, so I'm blanking on the name to replicate itself.
all right...
as for skipping around, make sure that you describe areas BEFORE any dialogue takes place, so we know we aren't still at NASA.
*raises eyebrow*
um...Umbreon isn't a legendary.
if Ho-oh couldn't do it, how could he hope to accomplish anything?
once again, I find it illogical that "a whole bunch of Salamence" that were all defeated (except one) by a Pelipper's Blizzard defeated Rayquaza. It's bending the laws of probability by a fairly wide margin.
what the...
Rayquaza's dead! how could it use a Thunderbolt???
eh?
what's that?
that doesn't make sense...
unless the Kyogre thing was in the past...
was it?
if it was, you REALLY need to say that it is, and not just assume that we know.
*rereads your explanation post*
DOH!
well, ya still need to be more clear.
okay...
never EVER say "there's a scene change"
work it into the descriptions..
eh?
shot? what shot?
you never mentioned any shot!
dude...
they kicked in the guy's door?
sheesh...
and now, they're forcing him to go with 'em?
who do they think they are? the Police with a warrant or something?
*raises eyebrow*
how would they know that Deoxys is in charge of the space station?
*raises eyebrow*
that doesn't explain Mewtwo's ability. If you remember, that was the question, not what he was doing.
um...Billy's the weakest link because he's got feelings, and is so human that he needs space in which to deal with them?
*raises eyebrow*
all right...
you may have noticed that I focused on just a few of your science errors...as I reviewed the chapters.
now, things about the entire fic.
Well, I have to say that I didn't especially care for it. Description, while it was there, was fleeting. Characters had minimal personalities, controlled extremely powerful Pokemon, they gained even more power at the end, in addition to several implausible situations that you put before me, as the reader. (plus there's the fact that you never said what LOA stood for. If all the main characters are working for it, we should at least know what it stands for)
However, the one shining thing about your fic that makes it stand out is its superb plot.
Unfourtunately, to me, it wasn't enough to offset what I percieved to be the major areas in which this piece of fiction was lacking.
Work on your description. While it is true that you can have too much description (a la exact measurements of everything), that is boring just to write, in my opinion.