Brady is currently 4th all time in yards and TD's, right behind Brees in both. So barring injuries, he will end up either 1st or 2nd all time in both stats. Also has a better td/int ration than manning. Also played with significantly less talent overall on offense through his career. So yea within a few years, it won't be less, and manning had more.
Brady will never surpass Manning from an individual standpoint
Manning has
6,125 in pass completions
Brady has
5,244 in pass completions
Manning has
65.3 in percentage
Brady has
63.8 in percentage
Manning has
71,940 in passing yards
Brady has
61,582 in passing yards
College records
Tennessee Volunteers records
Most passing attempts (career): 1,381
Most passing attempts (season): 477 (1997)
Most passing attempts (game): 65 (09/21/96 vs. Florida)
Most completions (career): 863
Most completions (game): 37 (09/21/96 vs. Florida)
Most consecutive completions (game): 12 (11/22/97 vs. Kentucky)
Highest completion percentage (career): 62.49%
Highest completion percentage (season): 64.2% (1995)
Lowest interception percentage (career): 2.39%
Lowest interception percentage (season): 1.05% (1995)
Most consecutive passes without an interception (season): 132
Most passing yards (season): 3,819 (1997)
Most passing yards (career): 11,201
Most passing yards (game): 508 (11/22/97 vs. Kentucky)
Most offensive yards (career): 11,020
Most 500+ passing yard games (career): 1
Most 400+ passing yard games (career): 3
Most 300+ passing yard games (career): 18
Most 300+ passing yard games (season): 9 (1997)
Most consecutive 300+ passing yard games: 7
Most 200+ passing yard games (career): 30
Most wins as starting quarterback (career): 39
Most touchdown passes (career): 89
Most touchdown passes (game): 5 (08/30/97 vs. Texas Tech, 11/22/97 vs. Kentucky)
Most touchdowns (career): 101
Most offensive plays (career): 1,534
Most offensive plays (season): 538 (1997)
Most offensive plays (game): 70 (09/21/96 vs. Florida)
SEC records
Lowest interception percentage (season): 1.05% (1995)
Highest completion percentage (career): 62.49%
Lowest interception percentage (career): 2.39%
Most 300+ passing yard games (career): 18
Rookie records
Most touchdown passes: 26 (tied by Russell Wilson in 2012)
Most interceptions thrown: 28
Most consecutive games with a touchdown pass (games 4–16): 13
Most games with at least one touchdown pass: 15
Most games with 300+ yards passing: 4
With Marvin Harrison
Manning and former Colts wide receiver Marvin Harrison hold a number of QB-WR tandem records:
Most completions/receptions (career): 95
Most passing/receiving yards (career): 12,756
Most passing/receiving touchdowns (career): 112
Most completions/receptions in a season, QB-to-WR duo: 143 (2002)
NFL records
Regular season
Most career passing yards: 71,940
Most career touchdown passes: 539
First quarterback to reach 200 career wins (playoffs and regular season)
Most Regular season career wins as starting quarterback: 186 (shared with Brett Favre)
Most touchdown passes, season: 55 (2013)
Most seasons with at least 4,000 passing yards: 14 (1999–2004, 2006–2010, 2012–2014)
Most passing yards, season: 5,477 (2013)
Most games with 40+ pass attempts in a season: 10 (2010)
Most consecutive seasons with at least 20 touchdown passes: 13 (1998–2010)
Most consecutive seasons with at least 25 touchdown passes: 13 (1998–2010)
Most games with a perfect passer rating, career: 4 (includes 1 playoff game)
Most consecutive games started to open a career: 208
Most consecutive games with at least 2 touchdown passes: 13 (games 1–13, 2004)
Most consecutive games with at least 4 touchdown passes: 5 (games 7–11, 2004)
Most games with at least 4 touchdown passes, season: 8 (2013)
Most regular season games with at least 4 touchdown passes, career: 25
Most games with at least 5 touchdown passes, career: 8 (includes 1 playoff game)
Only QB with at least 6 touchdown passes in three games
One of eight QBs with at least 7 touchdown passes in a game
Highest career passing TDs/game average (min. 150 TD passes): 2.046 TDs/game
Highest completion percentage by a QB in one month in NFL history (min. 75 attempts): 81.8% (December 2008)
Most career games with a completion percentage of 70% or higher (min. 10 attempts): 66
Most consecutive regular season wins as a starter: 23 (2008–2009)
Most seasons with 10+ wins as a starter (regular season only): 14 (1999–2000, 2002–2010, 2012–2014)
Most seasons with 12+ wins as a starter (regular season only): 11 (1999, 2003–2009, 2012–2014)
Only QB with seven straight seasons of 12+ wins as a starter(2003–2009)
Only QB to lead five consecutive 4th quarter comeback wins (games 7–11, 2009)
First QB to defeat the other 31 teams in the regular season (Tom Brady did this later the same day, and Brett Favre did it the following week)
Most wins as a starting QB in a decade, regular season: 115 (2000s)
Most AP NFL MVP Awards: 5 (2003, 2004, 2008, 2009, 2013)
Pro Bowl records
Most Pro Bowl selections (tied with Tony Gonzalez, Bruce Matthews, and Merlin Olsen): 14
Most Pro Bowl selections for a QB: 14
Most consecutive Pro Bowl selections for a QB: 9 (during the 2002–2010 seasons)
Most passing attempts (career): 150
Most passing attempts (game): 41 (2004)
Most completions (career): 92
Most completions (game): 22 (2004)
Most passing yards (career): 1,278
Most passing yards (game): 342 (2004)
Most passing touchdowns (career): 13
Colts franchise records
Most passing attempts (career): 7,210
Most passing attempts (season): 679 (2010)
Most 40+ passing attempt games (career): 56
Most completions (career): 4,682
Most completions (season): 450 (2010)
Most completions (game): 40 (09/12/10 at Houston)
Most consecutive completions: 23 (12/14/08-12/18/08 vs. Detroit/Jacksonville)
Most games with 20+ completions (career): 140
Most consecutive games with 20+ completions: 14 (games 1–14, 2010)
Most games with 30+ completions (career): 23
Highest completion percentage (career): 64.9%
Highest completion percentage (season): 68.8% (2009)
Highest completion percentage (rookie season): 56.7%
Highest completion percentage (game): 87.5% (14/16 for 95 yards, 12/30/07 vs. Tennessee)
Most passing yards (career): 54,828
Most passing yards (game): 472 (10/31/04 vs. Kansas City)
Most 300+ passing yard games (career): 63
Most seasons with at least 4,000 passing yards : 11 (1999–2004, 2006–2010)
Most consecutive seasons with at least 4,000 passing yards (1999–2004): 6
Most touchdown passes (career): 399
Most touchdown passes (season): 49 (2004)
Most touchdown passes (rookie season): 26
Most touchdown passes (game): 6 (09/28/03 vs. New Orleans and 11/25/04 vs. Detroit)
Most games with at least 4 touchdown passes (career): 22
Most games with at least 4 touchdown passes (season, 2004): 6
Most games with at least 3 touchdown passes (career): 64
Most games with at least 1 touchdown pass (season): 15 (5 times)
Most games with at least 1 touchdown pass (rookie season): 15 (1998)
Most consecutive uninterrupted games with at least 1 touchdown pass: 27
Most consecutive games with at least 4 touchdown passes (games 7–11, 2004): 5 (2004)
Most consecutive games with at least 3 touchdown passes: 8 (games 5–12, 2004)
Most consecutive games with at least 2 touchdown passes: 13 (games 1–13, 2004)
Most consecutive games with at least 1 touchdown pass (rookie season): 13 (games 4–16)
Most consecutive seasons with at least 25 touchdown passes: 13 (1998–2010)
Highest touchdown percentage (career): 5.66%
Highest touchdown percentage (season): 9.86% (2004)
Highest touchdown percentage (game): 24.00% (09/28/03 vs. New Orleans)
Most interceptions thrown (game): 6 (11/11/07 vs. San Diego)
Most interceptions thrown (season): 28 (1998)
Highest passer rating (career): 94.9
Highest passer rating (season): 121.1 (2004)
Most games with a perfect passer rating (career): 4 (includes 1 playoff game)
Most consecutive games started to open a career by a quarterback: 208 (current)
Most consecutive games started, franchise history: 208 (current)
Most comeback wins in the 4th quarter (career): 35 (includes one playoff game)
Most comeback wins in the 4th quarter (season): 7 (2009)
Most game-winning drives in the 4th quarter/overtime (career): 46 (includes one playoff game)
Most game-winning drives in the 4th quarter/overtime (season): 7 (1999, 2008, 2009)
Broncos franchise records
Highest completion percentage (season): 68.6% (2012)
Highest completion percentage (career): 66.5%
Most completions (season): 450 (2013)
Most pass attempts (season): 679 (2013)
Most passing yards (season): 5,477 (2013)
Most 300+ passing yard games (season): 12 (2013)
Most 400+ passing yard games (season): 3 (2013)
Highest average passing yards per game (season): 342.3 (2013)
Highest average passing yards per game (career): 295.0
Most touchdown passes (game): 7 (September 5, 2013 vs. Baltimore Ravens)
Most touchdown passes (season): 55 (2013)
Highest passer rating (season): 115.1 (2013)
Highest passer rating (career): 101.7
Most seasons with 100+ passer rating: 3 (2012–2014)
Most touchdown passes without an interception (game): 7 (September 5, 2013 vs. Baltimore Ravens)
Most seasons with at least 4,000 passing yards : 3 (2012–2014)
Highest winning percentage as a starter (career): 78.9% (45-12-0)