Genderless pokemon and single-gender pokemon add their own wrinkles, but so far I'm sticking to 'mons that have 50/50 chances of being either gender.
In order to get shiny genderless mon you need to skip a frame.
Example; the 8th egg is a shiny so get 7 eggs from the daycare and put out the parent not holding the destiny knot (Magikarp in this case)
Save now and put the parent back, when the daycare girl says she found an egg decline it and accept the next offer, voila.. shiny beldum, magnemite etc..
This also works for 100% female pokemon like Vullaby which also need the extra frame.
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