Full list of version exclusives:
BD: Caterpie, Metapod, Butterfree, Ekans, Arbok, Growlithe, Arcanine, Seel, Dewgong, Scyther, Electabuzz, Murkrow, Gligar, Scizor, Elekid, Raikou, Entei, Suicune, Larvitar, Pupitar, Tyranitar, Ho-Oh, Seedot, Nuzleaf, Shiftry, Mawile, Zangoose, Solrock, Kecleon, Cranidos, Rampardos, Honchkrow, Stunky, Skuntank, Electivire, Gliscor, Dialga
SP: Weedle, Kakuna, Beedrill, Sandshrew, Sandslash, Vulpix, Ninetales, Slowpoke, Slowbro, Magmar, Pinsir, Articuno, Zapdos, Moltres, Slowking, Misdreavus, Teddiursa, Ursaring, Stantler, Magby, Lugia, Lotad, Lombre, Ludicolo, Sableye, Seviper, Lunatone, Bagon, Shelgon, Salamence, Shieldon, Bastiodon, Mismagius, Glameow, Purugly, Magmortar, Palkia