It might with Ocarina of Time, because Majora's Mask is a direct sequel to it, and it uses the same character models, while still feeling as different as a Zelda game can get.
Besides looking and controlling the same though, the two are completely different. That's what I was referring to.
True. But Navi's constant 'Hey! Listen!'-ing was really aggravating though. Fi's pop-outs are nothing compared to her annoyance.
Navi is just another sound effect. Fi will not let you ignore her.